You are correct, they are percentages. I can only guess that they reference of a seperate value that is not shown and if you adjust the base time without initial and final that they don't match and can cause a flare or just be diappointing. Just like turning off DOD with COT disabled, there is no direct link but one affects the other. Same with shift points and trying to adjust them by RPM. OR even changing MPH shift points without making a difference. Shift points seem be changed by more than the last cell values. If the last three cells are the same it seems to want to MPH past the shift point or shift early if there is a big difference befoer the last cell. Sorry to ramble but it just brings up that some adjustments don't have direct link or reasoning that are easy to see unless you stumble across them. I don't have a clear answer for you on it.
The only example I have was the 09 I just started tuning on. With my 09, I made "group" changes before I installed the tune and never had any flares or weird shifting. Last week when I was at the track, there was a 09 G8 that showed up which I ended up messing with. There wasn't much time so I only did some basic changes to timing and trans setting. I only adjusted shift MPH, BASE Time, TQ Management, PE table, and timing. With a quick return road run, it had weak shifts. Even when I was more aggressive with time and TQ Management it was weak and even flared. When the rest of the trans shift properties were matched to mine, it was flat out EVIL with the more aggressive BASE SHIFT times, and .3 on TQ Management. If you look at the 09 Vette trans setting they are 0 for shift times.....see attached file.....Yes, it is an auto a6 vette..
Thanks on the DOD/COT. I turned it off at the track once and never turned it back on. ops....