I appreciate your help man. I dug into my noises a little deeper and figured most, if not all of them out.
Don't judge me, I've been working on loud ass diesel engines and drove a 4 banger the last 4 years, so some of these things are very dumb. Just stuff I guess I really need to get use to!
The hum/tick/flutter noise seems to be my injectors...normal noise. The little vibration at low speed/low rpm seems like it is the tq conv starting to lock up...just a shit speed for the car, nothing crazy though.. Shifting issue: Going to hopefully flush trans this weekend, as long as time allows and see if that helps...The other flutter is almost definitely the bent rim, so later tonight I'm going to try moving the pass front tire to the rear and see if the noise moves with it. Seems to me that I really just need to get use to the car, but if you guys think its something else or have anything else to look at, please feel free to let me know!
Other than that it seems fine, obviously need to get a rim or rims to clear that issue up before saying its truly all good. but thanks again everyone!